Source code for stk.ea.selection.selectors.filter_molecules

Filter Molecules


from .selector import Selector

[docs]class FilterMolecules(Selector): """ Allows a :class:`.Selector` to select only some molecules. Examples -------- *Using a Selection Algorithm on a Subset of Batches* .. testcode:: using-a-selection-algorithm-on-a-subset-of-batches import stk selector = stk.FilterMolecules( # Use only molecules in the top 5 batches of size 3. filter=stk.Best(num_batches=5, batch_size=3), # Select from those molecules using roulette selection. selector=stk.Roulette(num_batches=20, batch_size=3), ) population = tuple( stk.MoleculeRecord( topology_graph=stk.polymer.Linear( building_blocks=( stk.BuildingBlock( smiles='BrCCBr', functional_groups=[stk.BromoFactory()], ), ), repeating_unit='A', num_repeating_units=2, ), ).with_fitness_value(i) for i in range(10) ) for batch in # Do stuff with batch. All the molecules in the batch # belong to the top 5 batches of size 3. The batch # was selected using roulette selection. pass """
[docs] def __init__(self, filter, selector): """ Initialize a :class:`.FilterMolecules` instance. Parameters ---------- filter : :class:`.Selector` Selects molecules which can be yielded by `selector`. selector : :class:`.Selector` Selects batches of molecules. The batches can only contain molecules yielded by `filter`. """ self._filter = filter self._selector = selector
[docs] def select( self, population, included_batches=None, excluded_batches=None, ): valid_batches = population=population, included_batches=included_batches, excluded_batches=excluded_batches, ) valid_population = tuple( record for batch in valid_batches for record in batch ) yield from population=valid_population, included_batches=included_batches, excluded_batches=excluded_batches, )