All modules for which code is available

• stk.databases.constructed_molecule
• stk.databases.molecule
• stk.databases.mongo_db.constructed_molecule
• stk.databases.mongo_db.molecule
• stk.databases.mongo_db.utilities
• stk.databases.mongo_db.value
• stk.databases.value
• stk.ea.crossover.crossers.compound.random
• stk.ea.crossover.crossers.molecule.crosser
• stk.ea.crossover.crossers.molecule.genetic_recombination
• stk.ea.crossover.records.record
• stk.ea.evolutionary_algorithm.evolutionary_algorithm
• stk.ea.evolutionary_algorithm.implementations.implementation
• stk.ea.evolutionary_algorithm.implementations.parallel
• stk.ea.evolutionary_algorithm.implementations.serial
• stk.ea.fitness_calculators.fitness_calculator
• stk.ea.fitness_calculators.fitness_function
• stk.ea.fitness_calculators.property_vector
• stk.ea.fitness_normalizers.add
• stk.ea.fitness_normalizers.divide_by_mean
• stk.ea.fitness_normalizers.fitness_normalizer
• stk.ea.fitness_normalizers.multiply
• stk.ea.fitness_normalizers.null
• stk.ea.fitness_normalizers.power
• stk.ea.fitness_normalizers.replace_fitness
• stk.ea.fitness_normalizers.sequence
• stk.ea.fitness_normalizers.shift_up
• stk.ea.fitness_normalizers.sum
• stk.ea.generation
• stk.ea.molecule_records.molecule
• stk.ea.mutation.mutators.compound.random
• stk.ea.mutation.mutators.molecule.mutator
• stk.ea.mutation.mutators.molecule.random_building_block
• stk.ea.mutation.mutators.molecule.random_topology_graph
• stk.ea.mutation.mutators.molecule.similar_building_block
• stk.ea.mutation.records.record
• stk.ea.plotters.progress
• stk.ea.plotters.selection
• stk.ea.selection.batch
• stk.ea.selection.selectors.above_average
• stk.ea.selection.selectors.best
• stk.ea.selection.selectors.filter_batches
• stk.ea.selection.selectors.filter_molecules
• stk.ea.selection.selectors.remove_batches
• stk.ea.selection.selectors.remove_molecules
• stk.ea.selection.selectors.roulette
• stk.ea.selection.selectors.selector
• stk.ea.selection.selectors.stochastic_universal_sampling
• stk.ea.selection.selectors.tournament
• stk.ea.selection.selectors.utilities.yielded_batches
• stk.ea.selection.selectors.worst
• stk.molecular.atoms.atom
• stk.molecular.atoms.atom_info
• stk.molecular.atoms.elements
• stk.molecular.bonds.bond
• stk.molecular.bonds.bond_info
• stk.molecular.functional_groups.factories.alcohol_factory
• stk.molecular.functional_groups.factories.aldehyde_factory
• stk.molecular.functional_groups.factories.amide_factory
• stk.molecular.functional_groups.factories.boronic_acid_factory
• stk.molecular.functional_groups.factories.bromo_factory
• stk.molecular.functional_groups.factories.carboxylic_acid_factory
• stk.molecular.functional_groups.factories.dibromo_factory
• stk.molecular.functional_groups.factories.difluoro_factory
• stk.molecular.functional_groups.factories.diol_factory
• stk.molecular.functional_groups.factories.fluoro_factory
• stk.molecular.functional_groups.factories.functional_group_factory
• stk.molecular.functional_groups.factories.iodo_factory
• stk.molecular.functional_groups.factories.primary_amino_factory
• stk.molecular.functional_groups.factories.ring_amine_factory
• stk.molecular.functional_groups.factories.secondary_amino_factory
• stk.molecular.functional_groups.factories.smarts_functional_group_factory
• stk.molecular.functional_groups.factories.terminal_alkene_factory
• stk.molecular.functional_groups.factories.terminal_alkyne_factory
• stk.molecular.functional_groups.factories.thioacid_factory
• stk.molecular.functional_groups.factories.thiol_factory
• stk.molecular.functional_groups.functional_groups.alcohol
• stk.molecular.functional_groups.functional_groups.aldehyde
• stk.molecular.functional_groups.functional_groups.alkene
• stk.molecular.functional_groups.functional_groups.alkyne
• stk.molecular.functional_groups.functional_groups.amide
• stk.molecular.functional_groups.functional_groups.boronic_acid
• stk.molecular.functional_groups.functional_groups.bromo
• stk.molecular.functional_groups.functional_groups.carboxylic_acid
• stk.molecular.functional_groups.functional_groups.dibromo
• stk.molecular.functional_groups.functional_groups.difluoro
• stk.molecular.functional_groups.functional_groups.diol
• stk.molecular.functional_groups.functional_groups.fluoro
• stk.molecular.functional_groups.functional_groups.functional_group
• stk.molecular.functional_groups.functional_groups.generic_functional_group
• stk.molecular.functional_groups.functional_groups.iodo
• stk.molecular.functional_groups.functional_groups.primary_amino
• stk.molecular.functional_groups.functional_groups.ring_amine
• stk.molecular.functional_groups.functional_groups.secondary_amino
• stk.molecular.functional_groups.functional_groups.single_atom
• stk.molecular.functional_groups.functional_groups.thioacid
• stk.molecular.functional_groups.functional_groups.thiol
• stk.molecular.key_makers.inchi
• stk.molecular.key_makers.inchi_key
• stk.molecular.key_makers.molecule
• stk.molecular.key_makers.smiles
• stk.molecular.key_makers.utilities
• stk.molecular.molecules.building_block
• stk.molecular.molecules.constructed_molecule
• stk.molecular.molecules.molecule.molecule
• stk.molecular.molecules.utilities
• stk.molecular.periodic_info
• stk.molecular.reactions.factories.dative_reaction_factory
• stk.molecular.reactions.factories.generic_reaction_factory
• stk.molecular.reactions.factories.reaction_factory
• stk.molecular.reactions.reactions.dative_reaction.dative_reaction
• stk.molecular.reactions.reactions.dative_reaction.utilities
• stk.molecular.reactions.reactions.one_one_reaction
• stk.molecular.reactions.reactions.one_two_reaction
• stk.molecular.reactions.reactions.reaction.new_atom
• stk.molecular.reactions.reactions.reaction.reaction
• stk.molecular.reactions.reactions.reaction.reaction_result
• stk.molecular.reactions.reactions.ring_amine_reaction
• stk.molecular.reactions.reactions.two_two_reaction
• stk.molecular.topology_graphs.cage.cage
• stk.molecular.topology_graphs.cage.metal_topologies.m12l24
• stk.molecular.topology_graphs.cage.metal_topologies.m24l48
• stk.molecular.topology_graphs.cage.metal_topologies.m2l4_lantern
• stk.molecular.topology_graphs.cage.metal_topologies.m3l3_triangle
• stk.molecular.topology_graphs.cage.metal_topologies.m3l6
• stk.molecular.topology_graphs.cage.metal_topologies.m4l4_square
• stk.molecular.topology_graphs.cage.metal_topologies.m4l4_tetrahedron
• stk.molecular.topology_graphs.cage.metal_topologies.m4l6_tetrahedron
• stk.molecular.topology_graphs.cage.metal_topologies.m4l6_tetrahedron_spacer
• stk.molecular.topology_graphs.cage.metal_topologies.m4l8
• stk.molecular.topology_graphs.cage.metal_topologies.m6l12_cube
• stk.molecular.topology_graphs.cage.metal_topologies.m6l2l3_prism
• stk.molecular.topology_graphs.cage.metal_topologies.m8l6_cube
• stk.molecular.topology_graphs.cage.three_plus_four.six_plus_eight
• stk.molecular.topology_graphs.cage.three_plus_three.four_plus_four
• stk.molecular.topology_graphs.cage.three_plus_three.one_plus_one
• stk.molecular.topology_graphs.cage.three_plus_three.two_plus_two
• stk.molecular.topology_graphs.cage.two_plus_five.twelve_plus_thirty
• stk.molecular.topology_graphs.cage.two_plus_four.eight_plus_sixteen
• stk.molecular.topology_graphs.cage.two_plus_four.five_plus_ten
• stk.molecular.topology_graphs.cage.two_plus_four.four_plus_eight
• stk.molecular.topology_graphs.cage.two_plus_four.six_plus_twelve
• stk.molecular.topology_graphs.cage.two_plus_four.ten_plus_twenty
• stk.molecular.topology_graphs.cage.two_plus_four.three_plus_six
• stk.molecular.topology_graphs.cage.two_plus_four.two_plus_four
• stk.molecular.topology_graphs.cage.two_plus_three.eight_plus_twelve
• stk.molecular.topology_graphs.cage.two_plus_three.four_plus_six
• stk.molecular.topology_graphs.cage.two_plus_three.four_plus_six_2
• stk.molecular.topology_graphs.cage.two_plus_three.six_plus_nine
• stk.molecular.topology_graphs.cage.two_plus_three.twenty_plus_thirty
• stk.molecular.topology_graphs.cage.two_plus_three.two_plus_three
• stk.molecular.topology_graphs.cage.vertices
• stk.molecular.topology_graphs.cof.cof
• stk.molecular.topology_graphs.cof.edge
• stk.molecular.topology_graphs.cof.hexagonal
• stk.molecular.topology_graphs.cof.honeycomb
• stk.molecular.topology_graphs.cof.kagome
• stk.molecular.topology_graphs.cof.linkerless_honeycomb
• stk.molecular.topology_graphs.cof.periodic_hexagonal
• stk.molecular.topology_graphs.cof.periodic_honeycomb
• stk.molecular.topology_graphs.cof.periodic_kagome
• stk.molecular.topology_graphs.cof.periodic_linkerless_honeycomb
• stk.molecular.topology_graphs.cof.periodic_square
• stk.molecular.topology_graphs.cof.square
• stk.molecular.topology_graphs.cof.vertices
• stk.molecular.topology_graphs.host_guest.complex
• stk.molecular.topology_graphs.host_guest.vertices
• stk.molecular.topology_graphs.macrocycle.macrocycle
• stk.molecular.topology_graphs.macrocycle.vertices
• stk.molecular.topology_graphs.metal_complex.metal_complex
• stk.molecular.topology_graphs.metal_complex.octahedral.octahedral
• stk.molecular.topology_graphs.metal_complex.octahedral.octahedral_delta
• stk.molecular.topology_graphs.metal_complex.octahedral.octahedral_lambda
• stk.molecular.topology_graphs.metal_complex.paddlewheel.paddlewheel
• stk.molecular.topology_graphs.metal_complex.porphyrin.porphyrin
• stk.molecular.topology_graphs.metal_complex.square_planar.bidentate_square_planar
• stk.molecular.topology_graphs.metal_complex.square_planar.cis_protected_square_planar
• stk.molecular.topology_graphs.metal_complex.square_planar.square_planar
• stk.molecular.topology_graphs.metal_complex.vertices
• stk.molecular.topology_graphs.polymer.linear.linear
• stk.molecular.topology_graphs.polymer.linear.vertices
• stk.molecular.topology_graphs.rotaxane.nrotaxane
• stk.molecular.topology_graphs.rotaxane.vertices
• stk.molecular.topology_graphs.topology_graph.construction_result.construction_result
• stk.molecular.topology_graphs.topology_graph.construction_result.periodic
• stk.molecular.topology_graphs.topology_graph.construction_state.construction_state
• stk.molecular.topology_graphs.topology_graph.edge
• stk.molecular.topology_graphs.topology_graph.edge_group
• stk.molecular.topology_graphs.topology_graph.optimizers.collapser
• stk.molecular.topology_graphs.topology_graph.optimizers.mchammer
• stk.molecular.topology_graphs.topology_graph.optimizers.null
• stk.molecular.topology_graphs.topology_graph.optimizers.optimizer
• stk.molecular.topology_graphs.topology_graph.optimizers.periodic_collapser
• stk.molecular.topology_graphs.topology_graph.optimizers.spinner
• stk.molecular.topology_graphs.topology_graph.optimizers.utilities
• stk.molecular.topology_graphs.topology_graph.topology_graph.topology_graph
• stk.molecular.topology_graphs.topology_graph.vertex
• stk.molecular.writers.mdl_mol
• stk.molecular.writers.pdb
• stk.molecular.writers.turbomole
• stk.molecular.writers.xyz
• stk.serialization.json.deserializers.constructed_molecule
• stk.serialization.json.deserializers.molecule
• stk.serialization.json.deserializers.utilities
• stk.serialization.json.serializers.constructed_molecule.constructed_molecule
• stk.serialization.json.serializers.molecule.molecule
• stk.serialization.json.serializers.molecule.utilities
• stk.utilities.utilities